Table of contents

• The jicbioimage Python package
  • Features
  • Related packages
• Installation notes
  • Introduction
  • Manual install
  • Using Docker
• Quick start guide
• Working with images
  • Introduction
  • Creating images
  • Accessing png representations of an image
  • Working with stacks of images
• Working with microscopy data
  • Introduction
  • Image collection classes
  • Obtaining image collections
  • Accessing data from microscopy collections
• Working with transformations
  • Introduction
  • Pre-built transformations
  • Creating a custom transform
  • Specifying dtype contracts
  • Customising the behaviour of the visual audit trail
• IPython integration
• API documentation